Conference abstracts and proceedings

2017

Koestler S, Fischer B, Korona D, Porcelli D, Russell S (2017) Dissection of the functional redundancy of the SoxB family transcription factors Dichaete and SoxN in CNS development. Europ. Dros. Res. Conf. P410

Korona D, Nightingale D, Fabre B, Lilley K, Russell S (2017) Characteristics and differential spatio-temporal profiling of Shaggy protein isomers revealed by CRISPR genome engineering. Dros. Res. Conf. P363

Korona D, Nightingale D, Fabre B, Lilley K, Russell S. (2017) Characteristics and differential spatio-temporal profiling of Shaggy protein isomers revealed by CRISPR genome engineering. Annu. Dros. Res. Conf. 58:197B

2014

Carl A and Russell S (2014) Evolutionary genomics of Group B Sox binding in Drosophilids. 4th International Sox meeting, Cleveland USA

Maher, J and Russell S (2014) A Fifth Group B Sox gene in the red flour beetle Tribolium castaneum. 4th International Sox meeting, Cleveland USA

Magbanua P, Umans B, Runneburger E, Russell S, White R. (2014). Insulators and topological domains in Drosophila. Long range genome interaction and transcription dynamics. Janelia Farm, USA

2013

Aikaterini Chatzipli A, White R & Russell S (2013) In vivo Hox target specificity in Drosophila. 23rd European Drosophila Research Conference, Barcelona, Spain

2012

Bossing T, Barros C, Fischer B, Russell S and D Shepherd D. (2012) Disruption of microtubule integrity initiates mitosis during CNS repair. 14thDrosophila Neurobiology Conference, Padua, Italy.

2011

Ferrero E and Russell S (2011) Genome-wide analysis of SoxNeuro reveals crucial roles in D. melanogaster neural development. 3rd International Sox meeting, Grainau, Germany

Aleksic J and Russell S (2011) The role of Dichaete in transcriptional regulation during Drosophila embryonic development. 3rd International Sox meeting, Grainau, Germany

2010

Aleksic J and Russell S (2010) The role of Dichaete in transcriptional regulation during Drosophila embryonic development. EMBO From Functional Genomics to Systems Biology meeting.

Auburn, R.P., Nègre, N., Senderowicz, L., Morrison, C.A., White, R.A.H., Russell, S., White, K.P. (2010). Biological validation of Drosophila melanogaster boundary elements. ENCODE and modENCODE consortium meeting. 10th to 12th March, Washington DC, USA.

2009

Phochanukul, N., Meadows, L., Russell, S. (2009). Genomic analysis of Sox100B during embryogenesis and testis development. Europ Dros. Res. Conf  21, P-189. (EDRC 2009)

Meadows, L., Chan, Y.S., Roote, J., Russell, S. (2009). Neighbourhood continuity is not necessary for correct gene expression in Drosophila testis. Europ. Dros. Res. Conf  21, M-02. (EDRC 2009)

White KP, Negre N, Spokony R, Grossman R, Posakony J, Miller S, Wagner U, Ishii H, Ren B, Kheradpour P, Bristow C, Kellis M, Kittler R, Bellen H, Russell S, White R. 2009 The Drosophila ENCODE project and recombineering tags into transcription factors. Europ. Dros. Res. Conf  21, L-01

2007

Riaz F.K., Huen D. and Russell S. 2007 Dam Identification with a temperature-sensitive DNA adenine methyltransferase Europ. Dros. Res. Conf  20

Ryder E., Spriggs H., Roote J., Drummond E., Drummond, J., Webster, J., Johnson, G., Lowe, N., Lilley, KS., Hester, S., Howard, J., Rees, J., Russell, S. and  D St. Johnston. 2007 Genome-wide mapping and characterisation of protein expression and interaction in Drosophila melanogaster using a hybrid PiggyBac/P-element YFP gene trap system with tandem affinity tags. A. Dros. Res. Conf. 48: 771C

Tüchler. T., Sykacek, P., Auburn, R.P., Meadows, L.A., Fischer, B., Micklem, G., Russell, S., Kreil, D.P. (2007). Tenfold improved performance of spatial normalization of microarrays. 17th Annual International Conference on Critical Assessment of Microarray Data Analysis (CAMDA07). 13th to 14th December 2007, Valencia, Spain. (CAMDA07)

Tüchler. T., Sykacek, P., Auburn, R.P., Meadows, L.A., Fischer, B., Micklem, G., Russell, S., Kreil, D.P. (2007). Tenfold improved performance of spatial normalization of microarrays. 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB). 21st to 25th July 2007, Vienna, Austria. (ISMB’07/ECCB /Proceedings)

2006

Jackson, R.A., Ryder, E., Janes, M., Fischer, B., Auburn, R.P., Russell, S., Fallows, G., Ferguson-Smith, A. (2006). Long-range analysis of chromatin encompassing a 1.7Mb imprinted domain. The European Science Foundation. Signalling to chromatin: epigenetics. 6th to 9th June, Wellcome Trust Genome Campus, Hinxton, UK.

Russell, S. (2006). From expression to regulation: microarray resources for Drosophila. The consortium for post-genome science: genomes to systems. 22nd to 24th March, Manchester, UK. (Consortium).

Crowther, D., Page, R., Ryder, E., Lomas, D. (2006). Genetic screens yield novel therapeutic targets in a Drosophila model of Alzheimer’s disease. EMBO-FEBS workshop on Amyloid formation Structure, mechanism of formation and cellular effects of amyloid aggregates. 25th to 28th March, Florence, Italy.

2005

Nanda, S. Chan, YS, DeFalco, T, van Doran, M  and S. Russell 2005  A conserved Sox protein, Sox100B, plays a role in gonad development in Drosophila. Europ. Dros. Res. Conf  19:OG16.

McKimmie, C, Carter, S and S. Russell 2005 The Drosophila Group D Sox gene Sox102F is involved in the development of the embryonic brain and CNS. Europ. Dros. Res. Conf  19:NB12.

Wang, J., Lynch, M.D., Russell, S., Dow, J.A.T. (2005). GeneChip Affymetrix UK Drosophila Service. A. Dros. Res. Conf. 46:878B. (FlyBase)

Lyne, R., Smith, R., Rutherford, K., Wakeling, M., Riley, T., Ji, W., Guillier, F., Lilley, K., Mizuguchi, K., Russell, S., Ashburner, M., Micklem, G. (2005). The FlyMine project. Europ. Dros. Res. Conf. 19:RE4. (FlyBase) (FlyMine)

Ryder, E., Jackson, R., Russell, S., Ferguson-Smith, A. (2005). MAMMOT – a set of tools for the design, annotation and visualisation of genomic tiling arrays for epigenetic studies. Second Alan Wolffe EMBO Conference on Chromatin and Epigenetics, 19th to 22nd May. Heidelberg, Germany. (EMBO)

2004

Ryder, E., Jackson, R., Ferguson-Smith, A., Russell, S. (2004). MAMMOT – a set of tools for the design and visualisation of genomic tiling arrays. Genome Informatics. 22nd to 26th September. Wellcome Trust Genome Campus, Hinxton, UK.

Russell, S. (2004). Genomics and post-genomics in Drosophila. Neurofly 04. 4th to 8th September, Neuchatel, Switzerland. (Neurofly’04)

Meadows, L., Auburn, R., Fischer, B., Kreil, D., Sevillano-Matilla, S., Micklem, G., Russell, S. (2004). Spatial microarray calibration by abundant spike controls. The Consortium for post-genome science: genomes to systems. 1st to 3rd September, Manchester, UK. (Consortium)

White, R.A.H., Birch-Machin, I., Gao, S., McGirr, R., Russell, S.(2004). A genome-wide analysis of the Heat Shock response inDrosophila by chromatin immunopurification and DNA microarray analysis. A. Dros. Res. Conf. 45:910A. (FlyBase)

Shen, S., Shan, G., Birch-Machin, I., White, R., Russell, S. (2004). The molecular function of Dichaete during Drosophila embryonic development. A. Dros. Res. Conf. 45:692B (FlyBase)

Ryder, E.J., DrosDel Consortium. (2004). DrosDel – A second generation deficiency kit for Drosophila melanogaster. A. Dros. Res. Conf. 45:907A. (FlyBase)

Lyne, R., Varley, A., Guillier, F., Rana, D., Smith, R., Wakeling, A., Woodbridge, M., Lilley, K., Mizuguchi, K., Russell, S., Ashburner, M., Micklem, G. (2004). The FlyMine Project. A. Dros. Res. Conf. 45:904A. (FlyBase) (FlyMine)

Russell, S., Kreil, D. P. (2004). Microarray data analysis – understanding and application of modern methods. Society for Computational Biology conference on Intelligent Systems for Molecular Biology (ISMB), 31st July to 4th August, Glasgow, Scotland. (ISMB’04)

Nanda, S. DeFalco, T., Van Doren, M., Russell, S.  2004 A conserved Sox protein, Sox100B, plays a role in gonad development in Drosophila. A. Dros. Res. Conf. 45:613A

2003

Russell S. (2003) The Drosophila genome: from sequence to functionEurop. Dros. Res. Conf 18:B01.

Ryder, E.J., DrosDel Consortium. (2003). DrosDel – A second generation deficiency kit for Drosophila melanogaster. Europ. Dros. Res. Conf. 18:B02. (FlyBase)

Kreil, D.P., Auburn, R.P., Meadows, L.A., Fischer, B., Russell, S., Micklem, G. (2003). Quantitative microarray spot profile optimization: a systematic evaluation of buffer/slide combinations. In German Conference in Bioinformatics, GCB 2003, (Mewes, H-W, Frishman, D., Heun, V. and Kramer, S. eds.) v.I, 77-81. (GCB’03) (Reprint)

Kreil, D.P., Auburn, R.P., Meadows, L.A., Russell, A., Micklem G. (2003). Quantitative microarray spot profile optimization: a systematic evaluation of buffer/slide combinations. International Society for Computational Biology conference on Intelligent Systems for Molecular Biology (ISMB), June 29 to July 3, Brisbane, Australia. (ISMB’03)

Ryder, E.J., DrosDel Consortium. (2003). DrosDel – A second generation deficiency kit for Drosophila melanogaster. A. Dros. Res. Conf. 44:1012A. (FlyBase)

2002

Meadows, L.A., Ashburner, M., Auburn, R., Brookman, J., Glover, D., McWilliam, L., Micklem, G., O’Kane, C., Russell, S., Skelton, J. (2002). The UK Drosophila Microarray Facility. A. Dros. Res. Conf. 43:945C. (FlyBase)

Overton, P.M., Meadows, L.A., Urban, J., Russell, S.R.H.(2002). The Drosophila Group B Sox genes Dichaete and SoxNeuro function redundantly during the development of the embryonic CNS. A. Dros. Res. Conf. 43:747C. (FlyBase)

Russell, R. (2002). Meeting Review: 2nd Bioinformatics Industrialization Workshop: Bioinformatics and Medicine. Comp Funct Genom 3(3): 270-276. (Abstract)

Ryder, E., Blows, F., Ashburner, M., Asztalos, Z., Coulson, D., Drummond, J., Glover, D., Gubb, D., Johnson, G., O’Kane, C., Pal, M., Panchal, P., Roote, J., Wang, S., Webster, J., Russell, S. (2002). High-throughput sequencing and analysis of Drosophila melanogaster P elements. A. Dros. Res. Conf. 43:997A. (FlyBase)

DeFaloc, T., Verney, G., Jenkins, A. Russell, S. and M. van Doren.  2002  The development of sexual dimorphism in the Drosophila gonad. Curr. Comm. Molec. Biol. Lehmann & Page 164.

Van Doren, M., DeFalco, T., Verney, G., Russell, S., Jenkins, A.  2002  The development of sexual dimorphism in the Drosophila gonad. A. Dros. Res. Conf. 43: 47

Verney, G., Russell, S., Van Doren, M.  2002  An analysis of Sox100B, a Sox9 homolog, during sexually dimorphic gonad development. A. Dros. Res. Conf. 43: 650B

2001

Meadows, L., Ashburner, M., Auburn, R., Blows, F., Brookman, J., Coulson, D., Drummond, J., Glover, D., McWilliam, L., Micklem, D., Micklem, G., O’Kane, C., Russell, S., Ryder, E., Skelton, J., Wang, S., Webster, J. (2001). The UK Drosophila Microarray Facility. Europ. Dros. Res. Conf. 17:I16. (FlyBase)

Overton, P.M., Meadows, L.A., McKimmie, C., Urban, J., Russell, S.R.H.(2001) The role of Group B SOX genes Dichaete and SoxNeuro in the development of the Drosophila embryonic CNS. Europ. Dros. Res. Conf. 17:N14. (FlyBase)

McKimmie, C., Overton, P.M., Russell, S.R.H.  2001  Two Drosophila Group B Sox genes, 21a and 21b and a Group D Sox gene, 102F are expressed dynamically during embryonic development. Europ. Dros. Res. Conf. 17:M16

2000 & earlier

Whitworth, A.J., Russell, S.  2000  Development and characterisation of proximal wing identity. Dros. Res. Conf. 41:585B

Loh, S., Russell, S. 1999  A Drosophila Sox gene implicated in gut development. Dros. Res. Conf. 40:277C

Russell, S., Soriano, N.S.  1999  The Drosophila Sox-domain gene Dichaete has multiple roles in embryonic development. Dros. Res. Conf. 40:420B

Sanchez Soriano, N., Oehler, S., Ashburner, M., Russell, S.R.H.  1998  The Drosophila SOX box gene Dichaete is required for correct midline development. Dros. Res. Conf. 39:838B

Loh, S.H.Y., Ashburner, M., Russell, S.R.H.  1998  Molecular and Genetic Characterisation of Drosophila Sox Genes. Dros. Res. Conf. 39:149B

Soriano, N.S., Oehler, S., Ashburner, M., Russell, S.R.H.  1997 The Drosophila Sox box gene Dichaete is required for correct midline development. Cold Spring Harbor meeting on neurobiology of Drosophila

Sanchez Soriano, N., Russell, S.R.H., Carpenter, A.T.C.  1997  The Drosophila SOX box gene Dichaete plays a role in nervous-system development. J. Neurogenet. 11:195

Ashburner, M., Russell, S.R.H., Sanchez-Soriano, N., Wright, C.R.  1996  Sox genes in Drosophila. HGM ’96

Wright, C., Carpenter, A.T.C., Russell, S.R.H., Ashburner, M.  1995  Isolation and characterization of an embryonically expressed member of the SOX gene family. Dros. Res. Conf. 36:173B

Heimbeck, G., Carpenter, A.T.C., Martin, C., Russell, S.R.H., Ashburner, M.  1995 Function of the Drosophila E78B truncated steroid receptor. Experientia 51:A23

Ashburner, M., Carpenter, A.T.C., Heimbeck, G., Martin, C., Russell, S.R.H.  1993  The ecdysone induced gene E78. Europ. Dros. Res. Conf. 13

Russell, S.R.H., Kaiser, K.  1993  mst35b, a male germline specific gene. Europ. Dros. Res. Conf. 13